(2018-05-17, 08:49 PM)Obiwan Wrote: Presumably the ‘bootstrap’ responses I mentioned earlier must find their way into the growing organism - how else other than through genetic material?
This is great discussion. I don't want to derail it in any way. However, I am committed to trying to re-organize the framework of the problem, so that it can be accessed in a modern scientific manner. That said - I have nothing but a general knowledge of bioinformatics.
Problem: the framework of the "magic" theory of matter and a belief that our epistemological view of function "comes to life" from physical properties.
Solution: Correctly assign the processes to their appropriate level of abstraction and stop the conflation of physical activity from information activity.
In physics the model for the transformation of materials and their states of energy is cause and effect. When the subject of investigation is instinct (a fascinating subject) the model of cause and effect modality fails; because instinctual responses are about signals and communication of informational objects. Genetic material - as a cause in starts out with this problem, without specifying the informational environment activity.
The process model for communication (as expressed in the math of Shannon et all) is a 3 stepper, not just two steps. (1)Signal from a source - (2) a channel of transmission (the environment comes into play) and (3) a receiving location where mutual information can be created.
Genetic material is not just a chemical object with logical cause and effect. The physical environment is a factor and tacitly; so is the informational environment at all three locations that are part of the message system of RNA. It is the factors regarding the informational environments that is missed in the traditional view of this.
The functionality of the RNA - is in a communication system! The outcome of the specific signal from a RNA molecule is only causal in a system of a RNA/DNA/Ribosome/ laden environment. Each of these other chemicals can be channels and regulatory signals for RNA expression.
And the "out of the box" idea - I am selling - is that the RNA/DNA/Ribosome laden environment is more than just chemical objects. It is filled with probable information objects that can be generated, objects whose structure absorb meaning from the environment.
Quote: A bootstrap is the program that initializes the operating system (OS) during startup.
A bootstrap program is an excellent example of a formal information object. It works as a signal source that doesn't physical cause something as a flow of electricity - but functions in an informational environment where a larger meaning system can receive its stimulus and evoke a response that is appropriate.
That was a long way around to say -- that it not the independent chemical magical property of RNA -- it is just coded for the right message to trigger a response in the informational environment of a species. The RNA doesn't have a memory - it enables the meaning of the memory to be extracted form a meaning-laden environment.